Detailed information of SNP:
|
SNP ID:
sf0728960477(Gbrowse)
Chromosome: chr07 Position: 28960477 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 62.46% | 37.54% |
| All Indica | 798 | 45.99% | 54.01% |
| All Japonica | 497 | 94.57% | 5.43% |
| Aus | 67 | 13.43% | 86.57% |
| Indica I | 375 | 53.60% | 46.40% |
| Indica II | 213 | 51.17% | 48.83% |
| Indica Intermediate | 210 | 27.14% | 72.86% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 90.43% | 9.57% |
| Japonica Intermediate | 68 | 73.53% | 26.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0728960477 | T->G | INTERGENIC | None |