Detailed information of SNP:
|
SNP ID:
sf0728960722(Gbrowse)
Chromosome: chr07 Position: 28960722 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 63.77% | 36.23% |
| All Indica | 794 | 47.23% | 52.77% |
| All Japonica | 497 | 95.37% | 4.63% |
| Aus | 67 | 14.93% | 85.07% |
| Indica I | 374 | 54.55% | 45.45% |
| Indica II | 211 | 52.61% | 47.39% |
| Indica Intermediate | 209 | 28.71% | 71.29% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 68 | 73.53% | 26.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0728960722 | G->A | INTERGENIC | None |