Detailed information of SNP:
|
SNP ID:
sf0728960861(Gbrowse)
Chromosome: chr07 Position: 28960861 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1414 | 63.15% | 36.85% |
| All Indica | 796 | 46.36% | 53.64% |
| All Japonica | 497 | 95.37% | 4.63% |
| Aus | 67 | 14.93% | 85.07% |
| Indica I | 372 | 53.76% | 46.24% |
| Indica II | 213 | 52.11% | 47.89% |
| Indica Intermediate | 211 | 27.49% | 72.51% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 68 | 73.53% | 26.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 67.50% | 32.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0728960861 | A->G | INTERGENIC | None |