Detailed information of SNP:
|
SNP ID:
sf0728960889(Gbrowse)
Chromosome: chr07 Position: 28960889 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1412 | 62.89% | 37.11% |
| All Indica | 793 | 46.41% | 53.59% |
| All Japonica | 497 | 94.37% | 5.63% |
| Aus | 67 | 14.93% | 85.07% |
| Indica I | 372 | 54.03% | 45.97% |
| Indica II | 212 | 51.89% | 48.11% |
| Indica Intermediate | 209 | 27.27% | 72.73% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 90.43% | 9.57% |
| Japonica Intermediate | 68 | 73.53% | 26.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 68.29% | 31.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0728960889 | C->A | INTERGENIC | None |