Detailed information of SNP:
|
SNP ID:
sf0728978779(Gbrowse)
Chromosome: chr07 Position: 28978779 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 64.62% | 35.38% |
| All Indica | 799 | 92.87% | 7.13% |
| All Japonica | 496 | 18.55% | 81.45% |
| Aus | 66 | 77.27% | 22.73% |
| Indica I | 375 | 94.93% | 5.07% |
| Indica II | 213 | 91.08% | 8.92% |
| Indica Intermediate | 211 | 91.00% | 9.00% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 93 | 74.19% | 25.81% |
| Japonica Intermediate | 68 | 30.88% | 69.12% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0728978779 | A->G | INTERGENIC | None |