Detailed information of SNP:
|
SNP ID:
sf0729012956(Gbrowse)
Chromosome: chr07 Position: 29012956 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1330 | 88.57% | 11.43% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 411 | 63.75% | 36.25% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 258 | 51.16% | 48.84% |
| Tropical Japonica | 89 | 89.89% | 10.11% |
| Japonica Intermediate | 64 | 78.12% | 21.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 92.31% | 7.69% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0729012956 | A->G | INTERGENIC | None |