Detailed information of SNP:
|
SNP ID:
sf0729076798(Gbrowse)
Chromosome: chr07 Position: 29076798 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1410 | 96.52% | 3.48% |
| All Indica | 799 | 99.87% | 0.13% |
| All Japonica | 491 | 91.85% | 8.15% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 329 | 89.06% | 10.94% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 11 | 27.27% | 72.73% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0729076798 | C->T | LOC_Os07g48570(LOC_Os07g48570.1) | Non-Synonymous SNP |