Detailed information of SNP:
|
SNP ID:
sf0729154113(Gbrowse)
Chromosome: chr07 Position: 29154113 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1415 | 94.84% | 5.16% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 493 | 85.19% | 14.81% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 332 | 81.63% | 18.37% |
| Tropical Japonica | 93 | 92.47% | 7.53% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0729154113 | A->C | INTERGENIC | None |