Detailed information of SNP:
|
SNP ID:
sf0729233636(Gbrowse)
Chromosome: chr07 Position: 29233636 |
Major allele:
G
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1402 | 79.74% | 20.26% |
| All Indica | 799 | 99.25% | 0.75% |
| All Japonica | 482 | 46.68% | 53.32% |
| Aus | 67 | 80.60% | 19.40% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 324 | 29.94% | 70.06% |
| Tropical Japonica | 94 | 91.49% | 8.51% |
| Japonica Intermediate | 64 | 65.62% | 34.38% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 82.50% | 17.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0729233636 | C->G | INTERGENIC | None |