Detailed information of SNP:
|
SNP ID:
sf0729238923(Gbrowse)
Chromosome: chr07 Position: 29238923 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1414 | 66.34% | 33.66% |
| All Indica | 799 | 98.37% | 1.63% |
| All Japonica | 497 | 15.90% | 84.10% |
| Aus | 62 | 75.81% | 24.19% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 61.70% | 38.30% |
| Japonica Intermediate | 68 | 29.41% | 70.59% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0729238923 | C->T | LOC_Os07g48860(LOC_Os07g48860.1) | INTRON |