Detailed information of SNP:
|
SNP ID:
sf0729252247(Gbrowse)
Chromosome: chr07 Position: 29252247 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1370 | 98.54% | 1.46% |
| All Indica | 798 | 100.00% | 0.00% |
| All Japonica | 451 | 95.57% | 4.43% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 100.00% | 0.00% |
| Temperate Japonica | 298 | 95.30% | 4.70% |
| Tropical Japonica | 92 | 95.65% | 4.35% |
| Japonica Intermediate | 61 | 96.72% | 3.28% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0729252247 | G->A | INTERGENIC | None |