Detailed information of SNP:
|
SNP ID:
sf0729252574(Gbrowse)
Chromosome: chr07 Position: 29252574 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1409 | 63.88% | 36.12% |
| All Indica | 799 | 96.62% | 3.38% |
| All Japonica | 488 | 10.04% | 89.96% |
| Aus | 67 | 83.58% | 16.42% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 92.96% | 7.04% |
| Indica Intermediate | 211 | 95.26% | 4.74% |
| Temperate Japonica | 329 | 0.91% | 99.09% |
| Tropical Japonica | 92 | 30.43% | 69.57% |
| Japonica Intermediate | 67 | 26.87% | 73.13% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 41 | 51.22% | 48.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0729252574 | G->A | INTERGENIC | None |