Detailed information of SNP:
|
SNP ID:
sf0729265024(Gbrowse)
Chromosome: chr07 Position: 29265024 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 62.88% | 37.12% |
| All Indica | 799 | 96.37% | 3.63% |
| All Japonica | 497 | 9.66% | 90.34% |
| Aus | 67 | 80.60% | 19.40% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 91.55% | 8.45% |
| Indica Intermediate | 211 | 95.73% | 4.27% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 29.79% | 70.21% |
| Japonica Intermediate | 68 | 26.47% | 73.53% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 40 | 42.50% | 57.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0729265024 | T->G | INTERGENIC | None |