Detailed information of SNP:
|
SNP ID:
sf0729287266(Gbrowse)
Chromosome: chr07 Position: 29287266 |
Major allele:
T
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 58.60% | 41.40% |
| All Indica | 799 | 94.74% | 5.26% |
| All Japonica | 497 | 5.03% | 94.97% |
| Aus | 67 | 46.27% | 53.73% |
| Indica I | 375 | 98.67% | 1.33% |
| Indica II | 213 | 88.73% | 11.27% |
| Indica Intermediate | 211 | 93.84% | 6.16% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 6.38% | 93.62% |
| Japonica Intermediate | 68 | 26.47% | 73.53% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 41 | 39.02% | 60.98% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0729287266 | G->T | INTERGENIC | None |