Detailed information of SNP:
|
SNP ID:
sf0729332590(Gbrowse)
Chromosome: chr07 Position: 29332590 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1387 | 61.21% | 38.79% |
| All Indica | 773 | 97.41% | 2.59% |
| All Japonica | 497 | 8.05% | 91.95% |
| Aus | 64 | 57.81% | 42.19% |
| Indica I | 367 | 98.64% | 1.36% |
| Indica II | 198 | 93.43% | 6.57% |
| Indica Intermediate | 208 | 99.04% | 0.96% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 24.47% | 75.53% |
| Japonica Intermediate | 68 | 25.00% | 75.00% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 39 | 43.59% | 56.41% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0729332590 | T->C | INTERGENIC | None |