Detailed information of SNP:
|
SNP ID:
sf0729359059(Gbrowse)
Chromosome: chr07 Position: 29359059 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 57.12% | 42.88% |
| All Indica | 799 | 91.24% | 8.76% |
| All Japonica | 497 | 4.83% | 95.17% |
| Aus | 66 | 56.06% | 43.94% |
| Indica I | 375 | 94.93% | 5.07% |
| Indica II | 213 | 86.85% | 13.15% |
| Indica Intermediate | 211 | 89.10% | 10.90% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 6.38% | 93.62% |
| Japonica Intermediate | 68 | 26.47% | 73.53% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 42.86% | 57.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0729359059 | G->A | INTERGENIC | None |