Detailed information of SNP:
|
SNP ID:
sf0729362258(Gbrowse)
Chromosome: chr07 Position: 29362258 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 60.96% | 39.04% |
| All Indica | 799 | 95.49% | 4.51% |
| All Japonica | 497 | 8.25% | 91.75% |
| Aus | 67 | 62.69% | 37.31% |
| Indica I | 375 | 96.80% | 3.20% |
| Indica II | 213 | 92.96% | 7.04% |
| Indica Intermediate | 211 | 95.73% | 4.27% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 24.47% | 75.53% |
| Japonica Intermediate | 68 | 26.47% | 73.53% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 40.48% | 59.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0729362258 | T->G | INTERGENIC | None |