Detailed information of SNP:
|
SNP ID:
sf0729362268(Gbrowse)
Chromosome: chr07 Position: 29362268 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 60.54% | 39.46% |
| All Indica | 799 | 94.87% | 5.13% |
| All Japonica | 497 | 8.05% | 91.95% |
| Aus | 67 | 62.69% | 37.31% |
| Indica I | 375 | 96.80% | 3.20% |
| Indica II | 213 | 92.02% | 7.98% |
| Indica Intermediate | 211 | 94.31% | 5.69% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 23.40% | 76.60% |
| Japonica Intermediate | 68 | 26.47% | 73.53% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 40.48% | 59.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0729362268 | A->G | INTERGENIC | None |