Detailed information of SNP:
|
SNP ID:
sf0729405489(Gbrowse)
Chromosome: chr07 Position: 29405489 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1297 | 96.07% | 3.93% |
| All Indica | 796 | 100.00% | 0.00% |
| All Japonica | 384 | 89.32% | 10.68% |
| Aus | 64 | 84.38% | 15.62% |
| Indica I | 373 | 100.00% | 0.00% |
| Indica II | 212 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 237 | 82.70% | 17.30% |
| Tropical Japonica | 88 | 100.00% | 0.00% |
| Japonica Intermediate | 59 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0729405489 | G->A | INTERGENIC | None |