Detailed information of SNP:
|
SNP ID:
sf0729407507(Gbrowse)
Chromosome: chr07 Position: 29407507 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 61.42% | 38.58% |
| All Indica | 799 | 95.74% | 4.26% |
| All Japonica | 496 | 8.27% | 91.73% |
| Aus | 67 | 56.72% | 43.28% |
| Indica I | 375 | 96.80% | 3.20% |
| Indica II | 213 | 94.84% | 5.16% |
| Indica Intermediate | 211 | 94.79% | 5.21% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 93 | 23.66% | 76.34% |
| Japonica Intermediate | 68 | 27.94% | 72.06% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0729407507 | G->A | INTERGENIC | None |