Detailed information of SNP:
|
SNP ID:
sf0729412502(Gbrowse)
Chromosome: chr07 Position: 29412502 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1255 | 96.89% | 3.11% |
| All Indica | 784 | 99.62% | 0.38% |
| All Japonica | 356 | 96.07% | 3.93% |
| Aus | 63 | 84.13% | 15.87% |
| Indica I | 365 | 100.00% | 0.00% |
| Indica II | 212 | 99.53% | 0.47% |
| Indica Intermediate | 207 | 99.03% | 0.97% |
| Temperate Japonica | 218 | 97.25% | 2.75% |
| Tropical Japonica | 87 | 100.00% | 0.00% |
| Japonica Intermediate | 51 | 84.31% | 15.69% |
| Group VI/Aromatic | 12 | 25.00% | 75.00% |
| Intermediate | 40 | 92.50% | 7.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0729412502 | G->A | INTERGENIC | None |