Detailed information of SNP:
|
SNP ID:
sf0729415956(Gbrowse)
Chromosome: chr07 Position: 29415956 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1258 | 86.09% | 13.91% |
| All Indica | 654 | 73.55% | 26.45% |
| All Japonica | 492 | 99.80% | 0.20% |
| Aus | 58 | 100.00% | 0.00% |
| Indica I | 301 | 58.80% | 41.20% |
| Indica II | 175 | 86.29% | 13.71% |
| Indica Intermediate | 178 | 85.96% | 14.04% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 63 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 97.50% | 2.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0729415956 | C->T | INTERGENIC | None |