Detailed information of SNP:
|
SNP ID:
sf0729423435(Gbrowse)
Chromosome: chr07 Position: 29423435 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 60.83% | 39.17% |
| All Indica | 799 | 95.37% | 4.63% |
| All Japonica | 495 | 8.48% | 91.52% |
| Aus | 67 | 56.72% | 43.28% |
| Indica I | 375 | 94.67% | 5.33% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 211 | 95.26% | 4.74% |
| Temperate Japonica | 334 | 0.30% | 99.70% |
| Tropical Japonica | 93 | 24.73% | 75.27% |
| Japonica Intermediate | 68 | 26.47% | 73.53% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 42.86% | 57.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0729423435 | A->G | INTERGENIC | None |