Detailed information of SNP:
|
SNP ID:
sf0729441300(Gbrowse)
Chromosome: chr07 Position: 29441300 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 96.61% | 3.39% |
| All Indica | 799 | 99.75% | 0.25% |
| All Japonica | 496 | 96.57% | 3.43% |
| Aus | 67 | 76.12% | 23.88% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 93 | 84.95% | 15.05% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0729441300 | C->T | LOC_Os07g49160(LOC_Os07g49160.1) | INTRON |