Detailed information of SNP:
|
SNP ID:
sf0729463257(Gbrowse)
Chromosome: chr07 Position: 29463257 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 61.23% | 38.77% |
| All Indica | 799 | 95.49% | 4.51% |
| All Japonica | 497 | 8.85% | 91.15% |
| Aus | 67 | 56.72% | 43.28% |
| Indica I | 375 | 97.07% | 2.93% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 211 | 94.79% | 5.21% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 22.34% | 77.66% |
| Japonica Intermediate | 68 | 29.41% | 70.59% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 39 | 51.28% | 48.72% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0729463257 | C->T | INTERGENIC | None |