Detailed information of SNP:
|
SNP ID:
sf0729491213(Gbrowse)
Chromosome: chr07 Position: 29491213 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1390 | 53.60% | 46.40% |
| All Indica | 797 | 79.92% | 20.08% |
| All Japonica | 486 | 9.88% | 90.12% |
| Aus | 59 | 66.10% | 33.90% |
| Indica I | 375 | 91.20% | 8.80% |
| Indica II | 211 | 81.04% | 18.96% |
| Indica Intermediate | 211 | 58.77% | 41.23% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 85 | 32.94% | 67.06% |
| Japonica Intermediate | 66 | 30.30% | 69.70% |
| Group VI/Aromatic | 9 | 22.22% | 77.78% |
| Intermediate | 39 | 48.72% | 51.28% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0729491213 | G->A | INTERGENIC | None |