Detailed information of SNP:
|
SNP ID:
sf0729494336(Gbrowse)
Chromosome: chr07 Position: 29494336 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 56.42% | 43.58% |
| All Indica | 798 | 80.08% | 19.92% |
| All Japonica | 497 | 13.88% | 86.12% |
| Aus | 67 | 80.60% | 19.40% |
| Indica I | 375 | 91.20% | 8.80% |
| Indica II | 212 | 81.60% | 18.40% |
| Indica Intermediate | 211 | 58.77% | 41.23% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 47.87% | 52.13% |
| Japonica Intermediate | 68 | 33.82% | 66.18% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0729494336 | C->T | INTERGENIC | None |