Detailed information of SNP:
|
SNP ID:
sf0729517480(Gbrowse)
Chromosome: chr07 Position: 29517480 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 52.19% | 47.81% |
| All Indica | 798 | 79.82% | 20.18% |
| All Japonica | 495 | 7.88% | 92.12% |
| Aus | 67 | 58.21% | 41.79% |
| Indica I | 375 | 91.20% | 8.80% |
| Indica II | 213 | 81.69% | 18.31% |
| Indica Intermediate | 210 | 57.62% | 42.38% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 93 | 21.51% | 78.49% |
| Japonica Intermediate | 67 | 26.87% | 73.13% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 40 | 52.50% | 47.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0729517480 | T->C | INTERGENIC | None |