Detailed information of SNP:
|
SNP ID:
sf0729517832(Gbrowse)
Chromosome: chr07 Position: 29517832 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1215 | 86.42% | 13.58% |
| All Indica | 797 | 99.62% | 0.38% |
| All Japonica | 305 | 51.48% | 48.52% |
| Aus | 61 | 88.52% | 11.48% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 99.53% | 0.47% |
| Indica Intermediate | 210 | 99.05% | 0.95% |
| Temperate Japonica | 173 | 27.75% | 72.25% |
| Tropical Japonica | 83 | 90.36% | 9.64% |
| Japonica Intermediate | 49 | 69.39% | 30.61% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 81.58% | 18.42% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0729517832 | G->A | INTERGENIC | None |