Detailed information of SNP:
|
SNP ID:
sf0729549931(Gbrowse)
Chromosome: chr07 Position: 29549931 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1333 | 74.04% | 25.96% |
| All Indica | 797 | 97.49% | 2.51% |
| All Japonica | 415 | 27.95% | 72.05% |
| Aus | 67 | 80.60% | 19.40% |
| Indica I | 374 | 99.20% | 0.80% |
| Indica II | 212 | 97.64% | 2.36% |
| Indica Intermediate | 211 | 94.31% | 5.69% |
| Temperate Japonica | 274 | 7.30% | 92.70% |
| Tropical Japonica | 86 | 83.72% | 16.28% |
| Japonica Intermediate | 55 | 43.64% | 56.36% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 67.50% | 32.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0729549931 | C->T | INTERGENIC | None |