Detailed information of SNP:
|
SNP ID:
sf0729557878(Gbrowse)
Chromosome: chr07 Position: 29557878 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1408 | 51.21% | 48.79% |
| All Indica | 791 | 25.16% | 74.84% |
| All Japonica | 497 | 92.15% | 7.85% |
| Aus | 67 | 44.78% | 55.22% |
| Indica I | 372 | 11.56% | 88.44% |
| Indica II | 209 | 25.36% | 74.64% |
| Indica Intermediate | 210 | 49.05% | 50.95% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 78.72% | 21.28% |
| Japonica Intermediate | 68 | 72.06% | 27.94% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 39 | 56.41% | 43.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0729557878 | C->T | INTERGENIC | None |