Detailed information of SNP:
|
SNP ID:
sf0729558121(Gbrowse)
Chromosome: chr07 Position: 29558121 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 65.63% | 34.37% |
| All Indica | 799 | 97.50% | 2.50% |
| All Japonica | 497 | 12.27% | 87.73% |
| Aus | 67 | 80.60% | 19.40% |
| Indica I | 375 | 97.33% | 2.67% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 96.68% | 3.32% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 40.43% | 59.57% |
| Japonica Intermediate | 68 | 32.35% | 67.65% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 57.50% | 42.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0729558121 | T->C | INTERGENIC | None |