Detailed information of SNP:
|
SNP ID:
sf0729569794(Gbrowse)
Chromosome: chr07 Position: 29569794 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1324 | 97.66% | 2.34% |
| All Indica | 797 | 100.00% | 0.00% |
| All Japonica | 408 | 92.65% | 7.35% |
| Aus | 63 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 100.00% | 0.00% |
| Temperate Japonica | 260 | 88.85% | 11.15% |
| Tropical Japonica | 92 | 100.00% | 0.00% |
| Japonica Intermediate | 56 | 98.21% | 1.79% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0729569794 | C->T | LOC_Os07g49370(LOC_Os07g49370.1) | INTRON |