Detailed information of SNP:
|
SNP ID:
sf0729586175(Gbrowse)
Chromosome: chr07 Position: 29586175 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1412 | 64.87% | 35.13% |
| All Indica | 795 | 96.73% | 3.27% |
| All Japonica | 497 | 11.67% | 88.33% |
| Aus | 67 | 80.60% | 19.40% |
| Indica I | 372 | 96.24% | 3.76% |
| Indica II | 212 | 98.58% | 1.42% |
| Indica Intermediate | 211 | 95.73% | 4.27% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 39.36% | 60.64% |
| Japonica Intermediate | 68 | 30.88% | 69.12% |
| Group VI/Aromatic | 13 | 92.31% | 7.69% |
| Intermediate | 40 | 57.50% | 42.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0729586175 | G->A | INTERGENIC | None |