Detailed information of SNP:
|
SNP ID:
sf0729604773(Gbrowse)
Chromosome: chr07 Position: 29604773 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 95.00% | 5.00% |
| All Indica | 799 | 98.62% | 1.38% |
| All Japonica | 497 | 88.73% | 11.27% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 97.33% | 2.67% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 335 | 94.33% | 5.67% |
| Tropical Japonica | 94 | 64.89% | 35.11% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0729604773 | C->T | INTERGENIC | None |