Detailed information of SNP:
|
SNP ID:
sf0729639274(Gbrowse)
Chromosome: chr07 Position: 29639274 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 69.46% | 30.54% |
| All Indica | 798 | 96.99% | 3.01% |
| All Japonica | 497 | 23.54% | 76.46% |
| Aus | 67 | 80.60% | 19.40% |
| Indica I | 375 | 98.13% | 1.87% |
| Indica II | 212 | 97.17% | 2.83% |
| Indica Intermediate | 211 | 94.79% | 5.21% |
| Temperate Japonica | 335 | 5.67% | 94.33% |
| Tropical Japonica | 94 | 76.60% | 23.40% |
| Japonica Intermediate | 68 | 38.24% | 61.76% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0729639274 | A->G | INTERGENIC | None |