Detailed information of SNP:



SNP ID: sf0729676044(Gbrowse)

Chromosome: chr07

Position: 29676044
Major allele: C

Minor allele: T

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1380 51.01% 48.99%
All Indica762 26.38% 73.62%
All Japonica497 91.15% 8.85%
Aus66 36.36% 63.64%
Indica I349 29.51% 70.49%
Indica II205 25.37% 74.63%
Indica Intermediate208 22.12% 77.88%
Temperate Japonica335 100.00% 0.00%
Tropical Japonica94 65.96% 34.04%
Japonica Intermediate68 82.35% 17.65%
Group VI/Aromatic14 7.14% 92.86%
Intermediate41 60.98% 39.02%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0729676044 C->T INTERGENIC None