Detailed information of SNP:
|
SNP ID:
sf0729676044(Gbrowse)
Chromosome: chr07 Position: 29676044 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1380 | 51.01% | 48.99% |
| All Indica | 762 | 26.38% | 73.62% |
| All Japonica | 497 | 91.15% | 8.85% |
| Aus | 66 | 36.36% | 63.64% |
| Indica I | 349 | 29.51% | 70.49% |
| Indica II | 205 | 25.37% | 74.63% |
| Indica Intermediate | 208 | 22.12% | 77.88% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 65.96% | 34.04% |
| Japonica Intermediate | 68 | 82.35% | 17.65% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 60.98% | 39.02% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0729676044 | C->T | INTERGENIC | None |