Detailed information of SNP:
|
SNP ID:
sf0729681105(Gbrowse)
Chromosome: chr07 Position: 29681105 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1405 | 60.00% | 40.00% |
| All Indica | 788 | 34.26% | 65.74% |
| All Japonica | 497 | 97.79% | 2.21% |
| Aus | 65 | 67.69% | 32.31% |
| Indica I | 368 | 42.12% | 57.88% |
| Indica II | 212 | 31.13% | 68.87% |
| Indica Intermediate | 208 | 23.56% | 76.44% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 90.43% | 9.57% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0729681105 | G->A | INTERGENIC | None |