Detailed information of SNP:
|
SNP ID:
sf0729691661(Gbrowse)
Chromosome: chr07 Position: 29691661 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1340 | 61.42% | 38.58% |
| All Indica | 741 | 40.35% | 59.65% |
| All Japonica | 480 | 94.79% | 5.21% |
| Aus | 66 | 46.97% | 53.03% |
| Indica I | 343 | 47.52% | 52.48% |
| Indica II | 203 | 31.03% | 68.97% |
| Indica Intermediate | 195 | 37.44% | 62.56% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 77 | 75.32% | 24.68% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 13 | 84.62% | 15.38% |
| Intermediate | 40 | 67.50% | 32.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0729691661 | T->C | INTERGENIC | None |