Detailed information of SNP:
|
SNP ID:
sf0800004009(Gbrowse)
Chromosome: chr08 Position: 4009 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 83.49% | 16.51% |
| All Indica | 797 | 75.53% | 24.47% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 64.18% | 35.82% |
| Indica I | 374 | 77.01% | 22.99% |
| Indica II | 213 | 84.51% | 15.49% |
| Indica Intermediate | 210 | 63.81% | 36.19% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0800004009 | G->A | INTERGENIC | None |