Detailed information of SNP:
|
SNP ID:
sf0800034708(Gbrowse)
Chromosome: chr08 Position: 34708 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 63.82% | 36.18% |
| All Indica | 795 | 98.36% | 1.64% |
| All Japonica | 497 | 9.26% | 90.74% |
| Aus | 67 | 44.78% | 55.22% |
| Indica I | 372 | 99.46% | 0.54% |
| Indica II | 212 | 97.17% | 2.83% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 37.23% | 62.77% |
| Japonica Intermediate | 68 | 10.29% | 89.71% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0800034708 | A->G | INTERGENIC | None |