Detailed information of SNP:
|
SNP ID:
sf0800034751(Gbrowse)
Chromosome: chr08 Position: 34751 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 66.95% | 33.05% |
| All Indica | 796 | 51.76% | 48.24% |
| All Japonica | 497 | 91.55% | 8.45% |
| Aus | 67 | 64.18% | 35.82% |
| Indica I | 374 | 68.72% | 31.28% |
| Indica II | 213 | 34.27% | 65.73% |
| Indica Intermediate | 209 | 39.23% | 60.77% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 65.96% | 34.04% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0800034751 | A->T | INTERGENIC | None |