Detailed information of SNP:
|
SNP ID:
sf0800062298(Gbrowse)
Chromosome: chr08 Position: 62298 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 79.92% | 20.08% |
| All Indica | 799 | 73.84% | 26.16% |
| All Japonica | 497 | 92.15% | 7.85% |
| Aus | 67 | 64.18% | 35.82% |
| Indica I | 375 | 74.93% | 25.07% |
| Indica II | 213 | 84.98% | 15.02% |
| Indica Intermediate | 211 | 60.66% | 39.34% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 67.02% | 32.98% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0800062298 | G->A | LOC_Os08g01080(LOC_Os08g01080.1) | UTR_3_PRIME |