Detailed information of SNP:



SNP ID: sf0800072313(Gbrowse)

Chromosome: chr08

Position: 72313
Major allele: C

Minor allele: T

Reference allele: T

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1414 57.92% 42.08%
All Indica796 92.09% 7.91%
All Japonica496 1.61% 98.39%
Aus67 65.67% 34.33%
Indica I373 95.71% 4.29%
Indica II213 91.55% 8.45%
Indica Intermediate210 86.19% 13.81%
Temperate Japonica335 0.90% 99.10%
Tropical Japonica93 4.30% 95.70%
Japonica Intermediate68 1.47% 98.53%
Group VI/Aromatic14 100.00% 0.00%
Intermediate41 48.78% 51.22%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0800072313 T->C INTERGENIC None