Detailed information of SNP:
|
SNP ID:
sf0800072313(Gbrowse)
Chromosome: chr08 Position: 72313 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 57.92% | 42.08% |
| All Indica | 796 | 92.09% | 7.91% |
| All Japonica | 496 | 1.61% | 98.39% |
| Aus | 67 | 65.67% | 34.33% |
| Indica I | 373 | 95.71% | 4.29% |
| Indica II | 213 | 91.55% | 8.45% |
| Indica Intermediate | 210 | 86.19% | 13.81% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 93 | 4.30% | 95.70% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 48.78% | 51.22% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0800072313 | T->C | INTERGENIC | None |