Detailed information of SNP:
|
SNP ID:
sf0800096169(Gbrowse)
Chromosome: chr08 Position: 96169 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 80.25% | 19.75% |
| All Indica | 795 | 74.21% | 25.79% |
| All Japonica | 497 | 92.15% | 7.85% |
| Aus | 65 | 66.15% | 33.85% |
| Indica I | 373 | 75.34% | 24.66% |
| Indica II | 211 | 85.78% | 14.22% |
| Indica Intermediate | 211 | 60.66% | 39.34% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 67.02% | 32.98% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0800096169 | C->T | INTERGENIC | None |