Detailed information of SNP:
|
SNP ID:
sf0800099200(Gbrowse)
Chromosome: chr08 Position: 99200 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 62.41% | 37.59% |
| All Indica | 799 | 49.31% | 50.69% |
| All Japonica | 497 | 91.35% | 8.65% |
| Aus | 67 | 2.99% | 97.01% |
| Indica I | 375 | 66.93% | 33.07% |
| Indica II | 213 | 30.99% | 69.01% |
| Indica Intermediate | 211 | 36.49% | 63.51% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 65.96% | 34.04% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 53.66% | 46.34% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0800099200 | A->T | INTERGENIC | None |