Detailed information of SNP:
|
SNP ID:
sf0800101374(Gbrowse)
Chromosome: chr08 Position: 101374 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1381 | 89.86% | 10.14% |
| All Indica | 799 | 82.98% | 17.02% |
| All Japonica | 460 | 99.57% | 0.43% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 80.00% | 20.00% |
| Indica II | 213 | 95.31% | 4.69% |
| Indica Intermediate | 211 | 75.83% | 24.17% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 65 | 96.92% | 3.08% |
| Japonica Intermediate | 61 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0800101374 | C->G | LOC_Os08g01150(LOC_Os08g01150.1) | SNPs that introduce initiation codons |