Detailed information of SNP:
|
SNP ID:
sf0800103112(Gbrowse)
Chromosome: chr08 Position: 103112 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 87.80% | 12.20% |
| All Indica | 799 | 83.10% | 16.90% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 66 | 50.00% | 50.00% |
| Indica I | 375 | 80.00% | 20.00% |
| Indica II | 213 | 95.31% | 4.69% |
| Indica Intermediate | 211 | 76.30% | 23.70% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0800103112 | G->A | LOC_Os08g01150(LOC_Os08g01150.1) | INTRON |