Detailed information of SNP:
|
SNP ID:
sf0800121371(Gbrowse)
Chromosome: chr08 Position: 121371 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 76.36% | 23.64% |
| All Indica | 799 | 67.71% | 32.29% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 65 | 9.23% | 90.77% |
| Indica I | 375 | 87.47% | 12.53% |
| Indica II | 213 | 38.50% | 61.50% |
| Indica Intermediate | 211 | 62.09% | 37.91% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0800121371 | A->G | INTERGENIC | None |