Detailed information of SNP:
|
SNP ID:
sf0800130056(Gbrowse)
Chromosome: chr08 Position: 130056 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1412 | 87.46% | 12.54% |
| All Indica | 792 | 78.66% | 21.34% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 93.32% | 6.68% |
| Indica II | 209 | 50.72% | 49.28% |
| Indica Intermediate | 209 | 80.38% | 19.62% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0800130056 | C->T | INTERGENIC | None |